Did it overheat before you changed the water pump? If not, you need to make absolutely sure that the replacement pump was a Focus pump and not a Mondeo one. Same engine, but these two pumps run in opposite directions due to the arrangement of the auxilliary belt. The pumps look identical apart from the impeller.
Here's another thread about another Ford Focus that keeps overheating. There are some more ideas for what the problem could possibly be here:
www.honestjohn.co.uk/forum/post/index.htm?t=95156
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