Not sure if it will solve your problem , but if you hold the window switch in the up position for around 5 to 10 seconds after the window has gone fully up, it will "teach" it the new closed position. Hope this helps.

May also be some expensive alarm failure if the above doesn't work.

Had a similar issue. What was happening was that when I blipped the keypad to lock the car, the window wound itself down. Not dropped - the window motor actually wound the window down! And then would not budge. When I got back in the car and started to drive, the window would, inch by inch, wind back up. Then when I got to my destination and locked the car, then semi-closed window would wind back down. Took 4 visits to Renault to fid the problem. Last visit was a solid 2.5 days work. 1 day to strip the car (the windows link to boxes all over - under the floor, in the dash, in the engine bay), half day to trace the fault, 1 day to put it all back together. It is a very common issue and something a lottery as to where the faulty connection is, and thus how long to trace. So good luck.